Wrapper function to plot a dimensional reduction plot colored by clusters.
Usage
umap_rasterized(
data = obj,
group.by = "seurat_clusters",
raster.dpi = 500,
label = TRUE,
cols = pals::tol.rainbow(70),
umap1 = "umap_1",
umap2 = "umap_2",
reduction = "umap",
raster = TRUE
)Arguments
- data
Seurat object.
- group.by
meta.data column to group the dimensional reduction plot by, for example a clustering solution.
- raster.dpi
Pixel resolution (numeric; default 500).
- label
Boolean. Plot labels?
- cols
Color palette.
- umap1
First UMAP dimension as found in the meta.data.
- umap2
Second UMAP dimension as found in the meta.data.
- reduction
Which reduction to use.
- raster
Boolean. Rasterize the plot?