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Demo data set

Source: R/data.R
demo_lcmv.Rd

Demo data set for the PICtR workflow containing sampled cells from the spleens of LCMV infected mice (day 7) and control. For demonstration purposes, only CD3, MHCII, CD11c, CD11b, CD45_2, CD19, Ly6G, CD90_1, CD4, and CD8 are included as cell type markers.

Usage

data(demo_lcmv)

Format

72620 observations (cells) and 14 variables (markers, scaled to 0-1023).

FSC.A

Forward scatter area

FSC.H

Forward scatter height

SSC.A

Side scatter area

SSC.H

Side scatter height

fluorescence markers

CD3, MHCII, CD11c, CD11b, CD45_2, CD19, Ly6G, CD90_1, CD4, CD8

References

Vonficht, Jopp-Saile, Yousefian, Flore et al. Ultra-high scale cytometry-based cellular interaction mapping. Nature Methods (2025)