Marker Enrichment Modeling (MEM) Heatmap.

Usage

MEM_heatmap(
  obj,
  markers = c(),
  cluster_col = "seurat_clusters",
  cols = pals::coolwarm(100),
  heatmap_name = "MEM enrichment score",
  heatmap_column_title = "marker",
  heatmap_row_title = "cluster",
  scale_width = 2.2,
  scale_height = 5
)

Arguments

obj: The Seurat object.
markers: Meta.data columns with features that should be plotted in the heatmap and the clustering resolution.
cluster_col: Character string specifying the column that contains the clustering solution.
cols: Color palette.
heatmap_name: Title of the heatmap.
heatmap_column_title: Title for the columns of the heatmap.
heatmap_row_title: Title for the rows of the heatmap.
scale_width: Scaling factor for the width of the heatmap in relation to the number of columns.
scale_height: Scaling factor for the height of the heatmap in relation to the number of rows.

Value

MEM heat map.